Tutorials

Downloading and preparing index manually

$ ssh vsc $ screen -D -R $ qsub -I -l walltime=10:00:00 -l nodes=1:ppn=4 $ module load pandas $ genairics console >>> gax.resources.RetrieveGenome(genome=’mus_musculus’,release=91).run() >>> gax.resources.Bowtie2Index(genome=’mus_musculus’,release=91).run()